Tutorials

• Data input, cleaning and pre-processing: How to format, clean and preprocess your input data for PyWGCNA

• Quick Start: How to load data into PyWGCNA, find modules, and analyze them

• PyWGCNA object: How to interact with PyWGCNA objects and some parameters we have them in the object and how you can access them

• Compare two PyWGCNA objects: How to compare two PyWGCNA objects

• Compare more than two PyWGCNA objects: How to compare three PyWGCNA objects

• Compare PyWGCNA objects to gene marker list: How to compare PyWGCNA objects to external gene lists (here shown on marker genes from single-cell data)

• Functional enrichment analysis: How to perform functional enrichment analysis using databases such as GO, KEGG, and REACTOME in PyWGCNA object

• Visualize modules as network: How to visualize PyWGCNA objects as a network

• Recover Protein-Protein Interaction: How to find and plot PPI using STRING database.